Flare has absolutely no idea how to ignore hidden files such as the "CVS" folder where the source control plugin does it's local backup while files are checked out. What this means is that if I made a modification to, say, a master page or a stylesheet, Flare will show two entries in the drop-down menu with no indication as to their location. It's happened a fair number of times that I selected the wrong one in the drop down; when that happens, the building process either doesn't work because it can't find the file (because hidden files are ignored when generating output, obviously
Even if we leave CVS and go with subversion instead, it'll still leave some hidden folders (completely normal and expected) and I'll have the same issue.
Does anyone have any experience with this and know how to fix it? I've looked in the flare manual and can't find any way for Flare to ignore hidden files from the interface.