So many tools today just don't get enterprise development.
In Windows Explorer, find and copy the entire project folder that you created.
example
Let's say you have created a Flare project and stored it here: My Documents\My Projects\TheBigProject. In this case, you would copy the folder called "TheBigProject." This folder contains all of the files contained in your project.
In your "My Documents" folder, create a subfolder and name it My Templates (if it does not already exist).
This subfolder will be used to hold all of the different templates that you create in Flare, as well as templates for other MadCap Software applications.
Note: In Vista, the folder is called "Documents" instead of "My Documents."
I want templates stored in Source Control (svn in my case) !!! Not in "My Documents" so a project (or projects for that matter) can use the SAME consistent Templates through out.
There might be ways I can trick the software to using templates from the project folder itself or I just have not found it yet.
But all I see out of the box is "My Templates" (i.e. stored in "My Documents") and factory MadCap Templates. Unbelievable.
Apologize if I'm just stupid and don't see how to do it just yet.